Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RBPJ

Cell type

Cell type Class
Blood
Cell type
CUTLL1
NA
NA

Attributes by original data submitter

Sample

source_name
CUTLL1
cell line
CUTLL1
tumor stage
T lymphoblastic leukemia/lymphoma cell line
cell type
T lymphocyte
treatment
GSI 72 hrs, wash out 4 hrs
antibody
Rabbit anti RBPJ

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared according to New England Biolabs instructions accompanying the DNA Sample Prep Master Mix Set 1 (NEB E6040S).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
42226324
Reads aligned (%)
70.7
Duplicates removed (%)
8.1
Number of peaks
9898 (qval < 1E-05)

hg38

Number of total reads
42226324
Reads aligned (%)
72.1
Duplicates removed (%)
7.0
Number of peaks
9900 (qval < 1E-05)

Base call quality data from DBCLS SRA