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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NOTCH1
wikigenes
PDBj
CellType: CUTLL1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX369131
GSM1252936: NOTCH1 w4h; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
NOTCH1
Cell type
Cell type Class
Blood
Cell type
CUTLL1
NA
NA
Attributes by original data submitter
Sample
source_name
CUTLL1
cell line
CUTLL1
tumor stage
T lymphoblastic leukemia/lymphoma cell line
cell type
T lymphocyte
treatment
GSI 72 hrs, wash out 4 hrs
antibody
Rabbit anti Notch1
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared according to New England Biolabs instructions accompanying the DNA Sample Prep Master Mix Set 1 (NEB E6040S).
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
34937448
Reads aligned (%)
75.2
Duplicates removed (%)
7.9
Number of peaks
9900 (qval < 1E-05)
hg19
Number of total reads
34937448
Reads aligned (%)
74.6
Duplicates removed (%)
9.1
Number of peaks
9885 (qval < 1E-05)
Base call quality data from
DBCLS SRA