Antigen

Antigen Class

TFs and others

Antigen

NOTCH1

Cell type

Cell type Class

Blood

Cell type

CUTLL1

NA

NA

Sample

source_name

CUTLL1

cell line

CUTLL1

tumor stage

T lymphoblastic leukemia/lymphoma cell line

cell type

T lymphocyte

treatment

GSI 72 hrs

antibody

Rabbit anti Notch1

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared according to New England Biolabs instructions accompanying the DNA Sample Prep Master Mix Set 1 (NEB E6040S).

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg19

Number of total reads

44410559

Reads aligned (%)

78.0

Duplicates removed (%)

9.5

Number of peaks

7965 (qval < 1E-05)

hg38

Number of total reads

44410559

Reads aligned (%)

78.6

Duplicates removed (%)

8.3

Number of peaks

8170 (qval < 1E-05)