SRX369127
GSM1252932: input DNA GSI; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CUTLL1
NA
NA

Attributes by original data submitter

Sample

source_name
CUTLL1
cell line
CUTLL1
tumor stage
T lymphoblastic leukemia/lymphoma cell line
cell type
T lymphocyte
treatment
GSI 72 hrs
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared according to New England Biolabs instructions accompanying the DNA Sample Prep Master Mix Set 1 (NEB E6040S).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34922166
Reads aligned (%)
99.0
Duplicates removed (%)
6.6
Number of peaks
984 (qval < 1E-05)

hg19

Number of total reads
34922166
Reads aligned (%)
98.3
Duplicates removed (%)
7.8
Number of peaks
1277 (qval < 1E-05)

Base call quality data from DBCLS SRA