Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Digestive tract
Cell type
Gastric primary sample
NA
NA

Attributes by original data submitter

Sample

source_name
Gastric Primary Sample
tissuetype
Tumor
chip antibody
H3K4me1
reads length
101

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
267976510
Reads aligned (%)
89.0
Duplicates removed (%)
86.2
Number of peaks
20172 (qval < 1E-05)

hg19

Number of total reads
267976510
Reads aligned (%)
88.4
Duplicates removed (%)
86.6
Number of peaks
22642 (qval < 1E-05)

Base call quality data from DBCLS SRA