Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
NAMALWA
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
Burkitt's lymphoma cell line
cell line
Namalwa
lymphoma type
non-Hodgkin's Lymphoma cell line
passages
7
dnasei origin
Worthington

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
DNaseI-Seq samples were generated from a size selection of DNaseI-digested DNA fragments comprised within a range of 100 to 600 bp and subjected to library preparation as per manufacturer´s instruction (Illumina)

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
12610655
Reads aligned (%)
65.4
Duplicates removed (%)
14.6
Number of peaks
1746 (qval < 1E-05)

hg19

Number of total reads
12610655
Reads aligned (%)
64.8
Duplicates removed (%)
15.8
Number of peaks
1696 (qval < 1E-05)

Base call quality data from DBCLS SRA