Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
L-591
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Hodgkins

Attributes by original data submitter

Sample

source_name
Hodgkin's Lymphoma cell line
cell line
L591
lymphoma type
Hodgkin's Lymphoma cell line
passages
7
dnasei origin
Worthington

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
DNaseI-Seq samples were generated from a size selection of DNaseI-digested DNA fragments comprised within a range of 100 to 600 bp and subjected to library preparation as per manufacturer´s instruction (Illumina)

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
29926534
Reads aligned (%)
77.2
Duplicates removed (%)
36.1
Number of peaks
17571 (qval < 1E-05)

hg19

Number of total reads
29926534
Reads aligned (%)
76.7
Duplicates removed (%)
36.8
Number of peaks
17916 (qval < 1E-05)

Base call quality data from DBCLS SRA