Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA4

Cell type

Cell type Class
Digestive tract
Cell type
KATO III
Primary Tissue
Stomach
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
KATOIII GATA4
cell line
KATOIII
cell type
gastric cancer
chip antibody
sc-9053

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
42827647
Reads aligned (%)
89.3
Duplicates removed (%)
5.7
Number of peaks
2163 (qval < 1E-05)

hg38

Number of total reads
42827647
Reads aligned (%)
91.3
Duplicates removed (%)
4.4
Number of peaks
2119 (qval < 1E-05)

Base call quality data from DBCLS SRA