Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA4

Cell type

Cell type Class
Digestive tract
Cell type
KATO III
Primary Tissue
Stomach
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
KATOIII GATA4
cell line
KATOIII
cell type
gastric cancer
chip antibody
sc-9053

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin extracts containing DNA fragments with an average size of 500 bp were immunoprecipitated using the antibodies ChIP-seq libraries were constructed using a ChIP-Seq sample prep kit (IP-102-1001, Illumina) and sequenced on a Genome Analyzer IIx instrument (Illumina)

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
42827647
Reads aligned (%)
89.3
Duplicates removed (%)
5.7
Number of peaks
2163 (qval < 1E-05)

hg38

Number of total reads
42827647
Reads aligned (%)
91.3
Duplicates removed (%)
4.4
Number of peaks
2119 (qval < 1E-05)

Base call quality data from DBCLS SRA