Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA6

Cell type

Cell type Class
Digestive tract
Cell type
AGS
Primary Tissue
Stomach
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
AGS GATA6
cell line
AGS
cell type
gastric cancer
chip antibody
sc-9055

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin extracts containing DNA fragments with an average size of 500 bp were immunoprecipitated using the antibodies ChIP-seq libraries were constructed using a ChIP-Seq sample prep kit (IP-102-1001, Illumina) and sequenced on a Genome Analyzer IIx instrument (Illumina)

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
49781077
Reads aligned (%)
74.1
Duplicates removed (%)
8.3
Number of peaks
18162 (qval < 1E-05)

hg38

Number of total reads
49781077
Reads aligned (%)
75.7
Duplicates removed (%)
7.0
Number of peaks
18280 (qval < 1E-05)

Base call quality data from DBCLS SRA