Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KLF5

Cell type

Cell type Class
Digestive tract
Cell type
YCC-3
NA
NA

Attributes by original data submitter

Sample

source_name
YCC3 KLF5
cell line
YCC3
cell type
gastric cancer
chip antibody
sc-22797

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin extracts containing DNA fragments with an average size of 500 bp were immunoprecipitated using the antibodies ChIP-seq libraries were constructed using a ChIP-Seq sample prep kit (IP-102-1001, Illumina) and sequenced on a Genome Analyzer IIx instrument (Illumina)

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
47917057
Reads aligned (%)
71.5
Duplicates removed (%)
17.1
Number of peaks
1468 (qval < 1E-05)

hg38

Number of total reads
47917057
Reads aligned (%)
73.6
Duplicates removed (%)
15.4
Number of peaks
1413 (qval < 1E-05)

Base call quality data from DBCLS SRA