Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
YCC-3
NA
NA

Attributes by original data submitter

Sample

source_name
YCC3 Input
cell line
YCC3
cell type
gastric cancer
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin extracts containing DNA fragments with an average size of 500 bp were immunoprecipitated using the antibodies ChIP-seq libraries were constructed using a ChIP-Seq sample prep kit (IP-102-1001, Illumina) and sequenced on a Genome Analyzer IIx instrument (Illumina)

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
51687598
Reads aligned (%)
80.3
Duplicates removed (%)
1.9
Number of peaks
1180 (qval < 1E-05)

hg19

Number of total reads
51687598
Reads aligned (%)
79.6
Duplicates removed (%)
3.2
Number of peaks
1218 (qval < 1E-05)

Base call quality data from DBCLS SRA