Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
shep

Cell type

Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage

Attributes by original data submitter

Sample

source_name
Kc167_Shep_ChIP-seq
cell line
Kc167
chip antibody
Shep guinea pig
chip antibody reference
PMID:23209434
input used
input-a

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed as in Matzat LH, Dale RK, Moshkovich N, Lei EP (2012) Tissue-specific regulation of chromatin insulator function. PLoS Genet 8: e1003069 ChIP was performed as in Matzat LH, Dale RK, Moshkovich N, Lei EP (2012) Tissue-specific regulation of chromatin insulator function. PLoS Genet 8: e1003069. “a” or “b” in filenames indicates which of 2 chromatin preps was used

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

dm3

Number of total reads
16720900
Reads aligned (%)
97.3
Duplicates removed (%)
10.2
Number of peaks
4883 (qval < 1E-05)

dm6

Number of total reads
16720900
Reads aligned (%)
97.0
Duplicates removed (%)
12.9
Number of peaks
5242 (qval < 1E-05)

Base call quality data from DBCLS SRA