Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage

Attributes by original data submitter

Sample

source_name
Kc167_input
cell line
Kc167
sample type
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed as in Matzat LH, Dale RK, Moshkovich N, Lei EP (2012) Tissue-specific regulation of chromatin insulator function. PLoS Genet 8: e1003069 ChIP was performed as in Matzat LH, Dale RK, Moshkovich N, Lei EP (2012) Tissue-specific regulation of chromatin insulator function. PLoS Genet 8: e1003069. “a” or “b” in filenames indicates which of 2 chromatin preps was used

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

dm6

Number of total reads
12038239
Reads aligned (%)
92.9
Duplicates removed (%)
23.2
Number of peaks
2834 (qval < 1E-05)

dm3

Number of total reads
12038239
Reads aligned (%)
93.2
Duplicates removed (%)
20.1
Number of peaks
1830 (qval < 1E-05)

Base call quality data from DBCLS SRA