Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K16ac

Cell type

Cell type Class
Larvae
Cell type
3rd instar
NA
NA

Attributes by original data submitter

Sample

source_name
third instar larvae
strain
msl-2-delta-7 / msl-2-delta-10
chip antibody
H4K16ac(Merck Milipore, 07-329)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Larvae were dissected and the front part fixed at RT for 15 min with 1% or 0.2% Formaldehyde. Chromatin was extracted using a sucrose cushion followed by Micrococcal Nuclease treatment and 10 cycles of sonication in a Bioruptor Pico. The lysate was clarified by centrifugation before immunoprecipitation, washes, elution by reverse crosslinking at 65deg for 14h. After RNaseA and ProteinaseK treatment, the DNA from Input and Immunoprecipitation was purified using Phenol-Chloroform Extraction and Ethanol precipitation. NEB Next Ultra II

Sequencing Platform

instrument_model
Illumina HiSeq 3000

dm6

Number of total reads
19805724
Reads aligned (%)
97.8
Duplicates removed (%)
6.3
Number of peaks
8624 (qval < 1E-05)

dm3

Number of total reads
19805724
Reads aligned (%)
97.8
Duplicates removed (%)
6.2
Number of peaks
8253 (qval < 1E-05)

Base call quality data from DBCLS SRA