SRX3629599
GSM2970409: ER E2 45min 3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7
tissue
Breast
chip-antibody
SC-543

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were cross-linked with 1% Formaldhye, DNA was sheared using ultrasound and IP was overnight at 4C ThruPLEX

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10003864
Reads aligned (%)
98.9
Duplicates removed (%)
1.7
Number of peaks
8761 (qval < 1E-05)

hg19

Number of total reads
10003864
Reads aligned (%)
98.3
Duplicates removed (%)
1.8
Number of peaks
8817 (qval < 1E-05)

Base call quality data from DBCLS SRA