Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7
tissue
Breast
chip-antibody
SC-543

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were cross-linked with 1% Formaldhye, DNA was sheared using ultrasound and IP was overnight at 4C ThruPLEX

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
5018072
Reads aligned (%)
97.3
Duplicates removed (%)
1.3
Number of peaks
5612 (qval < 1E-05)

hg38

Number of total reads
5018072
Reads aligned (%)
98.0
Duplicates removed (%)
1.2
Number of peaks
5539 (qval < 1E-05)

Base call quality data from DBCLS SRA