Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KLF5

Cell type

Cell type Class
Digestive tract
Cell type
GP5d
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
GP5d
cell line
GP5d
cell type
colon adenocarcinoma
hgn
KLF5
antibody
Santa Cruz Biotechnology, Inc. : sc-22797
control sample
GP5dControl_IgG_Rabbit
sirna
Control

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
27015880
Reads aligned (%)
48.2
Duplicates removed (%)
45.6
Number of peaks
3904 (qval < 1E-05)

hg38

Number of total reads
27015880
Reads aligned (%)
49.7
Duplicates removed (%)
44.4
Number of peaks
3945 (qval < 1E-05)

Base call quality data from DBCLS SRA