SRX360405
GSM1240271: THP1 PMA-VDR input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1 cells, differentiated to M2-type macrophages
cell line
THP-1
treatment
NA
treatment time
NA
antibody
NA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard protocol as suggested by the manufacturer for ChIP-seq libraries as utilized at the EMBL Gene Core in Heidelberg, Germany

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45360263
Reads aligned (%)
99.0
Duplicates removed (%)
29.7
Number of peaks
1100 (qval < 1E-05)

hg19

Number of total reads
45360263
Reads aligned (%)
98.0
Duplicates removed (%)
31.1
Number of peaks
1159 (qval < 1E-05)

Base call quality data from DBCLS SRA