SRX360402
GSM1240268: THP1 PMA-VDR unstim; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
VDR

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1 cells, differentiated to M2-type macrophages
cell line
THP-1
treatment
unstimulated
treatment time
NA
antibody
VDR

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard protocol as suggested by the manufacturer for ChIP-seq libraries as utilized at the EMBL Gene Core in Heidelberg, Germany

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
56783202
Reads aligned (%)
97.9
Duplicates removed (%)
34.4
Number of peaks
1290 (qval < 1E-05)

hg38

Number of total reads
56783202
Reads aligned (%)
99.0
Duplicates removed (%)
32.8
Number of peaks
1349 (qval < 1E-05)

Base call quality data from DBCLS SRA