SRX3603343
GSM2949413: MCF10A input DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
Input DNA
chip antibody
none
cell line
MCF10A

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were sonicated to retrieve lysates and protein-DNA complexes were isolated with antibody. To make libraries, TruSeq protocol was followed

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32727574
Reads aligned (%)
95.8
Duplicates removed (%)
7.7
Number of peaks
707 (qval < 1E-05)

hg19

Number of total reads
32727574
Reads aligned (%)
95.0
Duplicates removed (%)
9.0
Number of peaks
943 (qval < 1E-05)

Base call quality data from DBCLS SRA