Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERG

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
ERG_HUVEC
cell type
HUVEC
stimulation
none
chip antibody
ERG (Abcam, ab136152)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Whole cell lysate was sonicated and subsequently incubated with the antibody to isolate DNA. Libraries were prepared using KAPA Hyper Prep Kit (for illumina) (KAPA)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
33131710
Reads aligned (%)
78.7
Duplicates removed (%)
14.6
Number of peaks
62392 (qval < 1E-05)

hg38

Number of total reads
33131710
Reads aligned (%)
80.7
Duplicates removed (%)
13.1
Number of peaks
62463 (qval < 1E-05)

Base call quality data from DBCLS SRA