Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HOXD13

Cell type

Cell type Class
Digestive tract
Cell type
LoVo
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
LoVo
cell line
LoVo
cell type
colon adenocarcinoma
hgn
HOXD13
antibody
Santa Cruz Biotechnology, Inc. : sc-66927 X
control sample
batch3_chrom1_LoVo_IgG_Rabbit
qc successful
FailedQC
fraction of peaks close to tss
0.041534
lowest e-value for a high complexity de novo motif
0.0026

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
15593040
Reads aligned (%)
88.7
Duplicates removed (%)
7.6
Number of peaks
799 (qval < 1E-05)

hg38

Number of total reads
15593040
Reads aligned (%)
90.8
Duplicates removed (%)
6.4
Number of peaks
681 (qval < 1E-05)

Base call quality data from DBCLS SRA