Antigen

Antigen Class

TFs and others

Antigen

HNF1A

Cell type

Cell type Class

Digestive tract

Cell type

LoVo

Primary Tissue

Colon

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

LoVo

cell line

LoVo

cell type

colon adenocarcinoma

hgn

HNF1A

antibody

Santa Cruz Biotechnology, Inc. : sc-10791 X

control sample

batch3_chrom1_LoVo_IgG_Rabbit

qc successful

PassedQC

fraction of peaks close to tss

0.098901

lowest e-value for a high complexity de novo motif

5.6e-13

Sequenced DNA Library

library_name

ERROR: cannot retrieve data from NCBI: too many requests

library_strategy

ERROR: cannot retrieve data from NCBI: too many requests

library_source

ERROR: cannot retrieve data from NCBI: too many requests

library_selection

ERROR: cannot retrieve data from NCBI: too many requests

library_construction_protocol

ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model

ERROR: cannot retrieve data from NCBI: too many requests

cycle_sequence

ERROR: cannot retrieve data from NCBI: too many requests

cycle_count

ERROR: cannot retrieve data from NCBI: too many requests

flow_sequence

ERROR: cannot retrieve data from NCBI: too many requests

flow_count

ERROR: cannot retrieve data from NCBI: too many requests

key_sequence

ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads

24671994

Reads aligned (%)

94.5

Duplicates removed (%)

7.8

Number of peaks

946 (qval < 1E-05)

hg19

Number of total reads

24671994

Reads aligned (%)

93.7

Duplicates removed (%)

9.1

Number of peaks

1058 (qval < 1E-05)