SRX3591468
GSM2942552: ATACseq 2a; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
B-CLL cells
NA
NA

Attributes by original data submitter

Sample

source_name
B-Chronic Lymphocytic Leukemia (CLL) cels
cell type
Primary B-CLL cells
protocol
baseline

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extract_protocol Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42450664
Reads aligned (%)
0.0
Duplicates removed (%)
0.0
Number of peaks
13215 (qval < 1E-05)

hg19

Number of total reads
42450664
Reads aligned (%)
0.0
Duplicates removed (%)
0.1
Number of peaks
13262 (qval < 1E-05)

Base call quality data from DBCLS SRA