SRX3591456
GSM2942540: Pol2 ChIPseq 2a; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
B-CLL cells
NA
NA

Attributes by original data submitter

Sample

source_name
B-Chronic Lymphocytic Leukemia (CLL) cels
cell type
Primary B-CLL cells
protocol
baseline
chip-antibody
anti-RNA Pol II (Active Motif #39097)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extract_protocol Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34332272
Reads aligned (%)
92.2
Duplicates removed (%)
49.0
Number of peaks
12867 (qval < 1E-05)

hg19

Number of total reads
34332272
Reads aligned (%)
91.7
Duplicates removed (%)
49.9
Number of peaks
12757 (qval < 1E-05)

Base call quality data from DBCLS SRA