SRX3591010
GSM2944109: A673 Input DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Bone
Cell type
A-673
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
Rhabdomyosarcoma

Attributes by original data submitter

Sample

source_name
Ewing sarcoma cells
cell line
A673
cell type
Ewing sarcoma
chip antibody
None
cell number
20,000,000

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cell lysates were clarified from sonicated nuclei and MEIS1-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 3000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36329736
Reads aligned (%)
97.8
Duplicates removed (%)
7.9
Number of peaks
1135 (qval < 1E-05)

hg19

Number of total reads
36329736
Reads aligned (%)
96.9
Duplicates removed (%)
9.2
Number of peaks
1168 (qval < 1E-05)

Base call quality data from DBCLS SRA