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For hg19
BigWig
Peak-call (q < 1E-05)
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For hg38
BigWig
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Peak-call (q < 1E-10)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: MEIS1
wikigenes
PDBj
CellType: A-673
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3591009
GSM2944108: A673 MEIS1 ChIP-seq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
MEIS1
Cell type
Cell type Class
Bone
Cell type
A-673
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
Rhabdomyosarcoma
Attributes by original data submitter
Sample
source_name
Ewing sarcoma cells
cell line
A673
cell type
Ewing sarcoma
chip antibody
MEIS1 (Abcam, ab19867)
cell number
20,000,000
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cell lysates were clarified from sonicated nuclei and MEIS1-DNA complexes were isolated with antibody.
Sequencing Platform
instrument_model
Illumina HiSeq 3000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
29854351
Reads aligned (%)
35.6
Duplicates removed (%)
54.5
Number of peaks
939 (qval < 1E-05)
hg38
Number of total reads
29854351
Reads aligned (%)
37.1
Duplicates removed (%)
53.0
Number of peaks
939 (qval < 1E-05)
Base call quality data from
DBCLS SRA