Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MEIS1

Cell type

Cell type Class
Bone
Cell type
A-673
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
Rhabdomyosarcoma

Attributes by original data submitter

Sample

source_name
Ewing sarcoma cells
cell line
A673
cell type
Ewing sarcoma
chip antibody
MEIS1 (Abcam, ab19867)
cell number
20,000,000

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cell lysates were clarified from sonicated nuclei and MEIS1-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 3000

hg19

Number of total reads
29854351
Reads aligned (%)
78.3
Duplicates removed (%)
54.5
Number of peaks
939 (qval < 1E-05)

hg38

Number of total reads
29854351
Reads aligned (%)
78.9
Duplicates removed (%)
53.0
Number of peaks
939 (qval < 1E-05)

Base call quality data from DBCLS SRA