Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR3C1

Cell type

Cell type Class
Blood
Cell type
Monocytes
MeSH Description
Large, phagocytic mononuclear leukocytes produced in the vertebrate BONE MARROW and released into the BLOOD; contain a large, oval or somewhat indented nucleus surrounded by voluminous cytoplasm and numerous organelles.

Attributes by original data submitter

Sample

source_name
Adult Human Peripheral Blood
tissue
Adult Human Peripheral Blood
chip-antibody
Glucocorticoid receptor
cell type
Monocytes
donor
Buffycoat 33

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The ChIPseq experiments were followed the Blueprint protocol, http://www.blueprint-epigenome.eu/. Libraries were prepared using the KAPA hyperprep kit.

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
24895030
Reads aligned (%)
165.2
Duplicates removed (%)
13.1
Number of peaks
488 (qval < 1E-05)

hg38

Number of total reads
24895030
Reads aligned (%)
166.1
Duplicates removed (%)
13.0
Number of peaks
532 (qval < 1E-05)

Base call quality data from DBCLS SRA