Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RARA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS derived chondrocytes
NA
NA

Attributes by original data submitter

Sample

source_name
Human iPS-derived cells during chondrocyte differentiation by the 2C method at day 7
cell type
Human iPS cells
tissue
Foreskin
days after differentiation
7
chip antibody
Mouse anti-human RARα antibody (Perseus Proteomics, PP-H1920-00)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
49293272
Reads aligned (%)
139.3
Duplicates removed (%)
12.9
Number of peaks
5887 (qval < 1E-05)

hg38

Number of total reads
49293272
Reads aligned (%)
141.4
Duplicates removed (%)
12.7
Number of peaks
6746 (qval < 1E-05)

Base call quality data from DBCLS SRA