Curated Sample Data


Genome
ce10
Antigen Class
Histone
Antigen
H3K9me3
Cell type Class
Larvae
Cell type
L4

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
F1set9set26_whole_worm
strain background
N2
genotype/variation
F1set-9 set-26
developmental stage
L4
chip antibody
H3K4me3 (Millipore, Billerica, MA 17-614, lot:2756917)

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA-seq: RNA was extracted using Trizol reagent. ChIP-seq: Crosslinked protein-DNA complex were isolated with antibody. RNA libraries were prepared for sequencing using Ovation Human FFPE RNA-Seq Library Systems (NuGEN) kit ChIP-seq libraries were prepared for sequencing using NEBNext® Ultra™ II DNA Library Prep Kit for Illumina® (NEB)

Platform Information


instrument_model
NextSeq 500

External Database Query

Logs in read processing pipeline


Number of total reads
38739324
Reads aligned (%)
80.0
Duplicates removed (%)
28.9
Number of peaks
3386 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA