Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Hematopoietic Stem Cells
MeSH Description
Progenitor cells from which all blood cells derived. They are found primarily in the bone marrow and also in small numbers in the peripheral blood.

Attributes by original data submitter

Sample

strain
C57BL/6J
age
3 months
sex
male
tissue
Bone Marrow
cell_type
Hematopoietic stem cells
growth_protocol
3 month old C57BL/6J mice housed in AAALAC-accredited, specific-pathogen-free animal care facilities at Baylor College of Medicine (BCM) with 12hr light-dark cycle and received standard chow ad libitum
treatment
Subcutaneous injection of corn oil (100μl), daily, for 7 days
replicate
Biological Replicate 1

Sequenced DNA Library

library_name
NK9803_01
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
49142595
Reads aligned (%)
67.6
Duplicates removed (%)
20.8
Number of peaks
27819 (qval < 1E-05)

mm9

Number of total reads
49142595
Reads aligned (%)
67.5
Duplicates removed (%)
20.9
Number of peaks
27786 (qval < 1E-05)

Base call quality data from DBCLS SRA