Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CREB1

Cell type

Cell type Class
Breast
Cell type
MDA-MB-134-VI
Primary Tissue
Breast
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
pCREB1 E2 ChIP-seq
cell line
MDA-MB-134
cell type
Epithelial ERalpha positive breast cancer cell line
passage
between 10 and 12
treated with
100 nM estradiol (E2) for 1hr
chip antibodies
pCREB1 (Cell Signalling Technology, 87G3, lot 14)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
35292876
Reads aligned (%)
54.8
Duplicates removed (%)
37.3
Number of peaks
1164 (qval < 1E-05)

hg38

Number of total reads
35292876
Reads aligned (%)
57.2
Duplicates removed (%)
35.2
Number of peaks
1616 (qval < 1E-05)

Base call quality data from DBCLS SRA