Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MDA-MB-134-VI
Primary Tissue
Breast
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
ERα E2 ChIP-seq
cell line
MDA-MB-134
cell type
Epithelial ERalpha positive breast cancer cell line
passage
between 10 and 12
treated with
100 nM estradiol (E2) for 1hr
chip antibodies
ERα (Bethyl Laboratories, A300-498A )

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
23272804
Reads aligned (%)
53.7
Duplicates removed (%)
39.4
Number of peaks
19122 (qval < 1E-05)

hg38

Number of total reads
23272804
Reads aligned (%)
55.1
Duplicates removed (%)
38.3
Number of peaks
19233 (qval < 1E-05)

Base call quality data from DBCLS SRA