Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic heart
NA
NA

Attributes by original data submitter

Sample

source_name
E10.0 cardiac tissue
strain
CD1
genotype
WT
development stage
Embryonic day 10.0
tissue
cardiac
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Embryonic hearts were collected in PBS, fixed and DNA was isolated for ChIP-seq according to methods in [Wilczewski et. Al, 2017]. Libraries were prepared using the Nextera XT DNA Library Kit.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
55329903
Reads aligned (%)
98.1
Duplicates removed (%)
15.3
Number of peaks
242 (qval < 1E-05)

mm9

Number of total reads
55329903
Reads aligned (%)
98.1
Duplicates removed (%)
15.4
Number of peaks
229 (qval < 1E-05)

Base call quality data from DBCLS SRA