Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Lung
Cell type
Lung
MeSH Description
Either of the pair of organs occupying the cavity of the thorax that effect the aeration of the blood.

Attributes by original data submitter

Sample

source_name
lung tissue
strain
C57BL/6J
genotype
Wild-type
treatment
BD
tissue
lung

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
TruSeq libraries were constructed as per manufacturer's recommendations.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
72600402
Reads aligned (%)
98.7
Duplicates removed (%)
31.3
Number of peaks
11777 (qval < 1E-05)

mm9

Number of total reads
72600402
Reads aligned (%)
98.5
Duplicates removed (%)
31.3
Number of peaks
11821 (qval < 1E-05)

Base call quality data from DBCLS SRA