Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCA4

Cell type

Cell type Class
Lung
Cell type
HS-SY-II
Primary Tissue
Lung
Tissue Diagnosis
Sarcoma Synovial

Attributes by original data submitter

Sample

source_name
HS-SY-II parental line untagged
cell line/type
Human Synovial sarcoma cells (HS-SY-II)
genotype/variation
HS-SY-II parental line untagged
condition/shrna
KDM2B. 4395
chip antibody
BRG1 (Abcam, Ab110641)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
17793024
Reads aligned (%)
0.0
Duplicates removed (%)
5.3
Number of peaks
0 (qval < 1E-05)

hg38

Number of total reads
27514880
Reads aligned (%)
0.0
Duplicates removed (%)
4.9
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA