GSM2916098: AB19 REN. 713 BRG1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SMARCA4
Cell type
Cell type Class
Lung
Cell type
HS-SY-II
Primary Tissue
Lung
Tissue Diagnosis
Sarcoma Synovial
Attributes by original data submitter
Sample
source_name
HS-SY-II parental line untagged
cell line/type
Human Synovial sarcoma cells (HS-SY-II)
genotype/variation
HS-SY-II parental line untagged
condition/shrna
REN. 713
chip antibody
BRG1 (Abcam, Ab110641)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For HA-tag, BRG1 and KDM2B ChIP 60-100 million cells were collected, pre-fixed with ethylene glycol bis(succinimidyl succinate) (EGS) for 30 min, and crosllinked with 1% formaldehyde for 15 min. For H3K27me3 ChIP about 10-20 million cells were crosslinkined with 1% formaldehyde for 15 min. Libraries were constructed using NEBNext® ChIP-Seq Library Prep Master Mix Set for Illumina accordingly with manufactor instructions. 6-10 samples were pooled per sequencing lane in order to generate 20-40 million reads per sample