Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
WT_input DNA
strain background
FVB
genotype/variation
wild type
tissue
mammary gland
tissue type
endpoint tumour
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For each sample, tail DNA was extracted to determine the genotype of the sample. Samples were flash frozen and also examined by immunblot analysis to confirm EZH2 status. DNA Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. DNA library preparation was performed using the TruSeq DNA sample preparation kit according to Illumina recommendations

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
43534398
Reads aligned (%)
91.8
Duplicates removed (%)
37.4
Number of peaks
406 (qval < 1E-05)

mm9

Number of total reads
43534398
Reads aligned (%)
91.7
Duplicates removed (%)
37.4
Number of peaks
451 (qval < 1E-05)

Base call quality data from DBCLS SRA