Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

source_name
embryo_ChIPSeq
genotype
5905
age
30min - 1 hour embryo
tissue
embryo
chip antibody
H3K27me3 (Millipore 07-449)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For ChIP-Seq, 5% mouse epigenome was used as internal control for H3K27me3 IP. ChIP libraries were prepared according to instructions of NEB DNA library prep kit (NEB, E7370L). RNA libraries were prepared according to instructions of NEB Ultra RNA library prep kit (NEB, E7530L).

Sequencing Platform

instrument_model
NextSeq 550

dm6

Number of total reads
12207576
Reads aligned (%)
77.0
Duplicates removed (%)
8.5
Number of peaks
1714 (qval < 1E-05)

dm3

Number of total reads
12207576
Reads aligned (%)
77.2
Duplicates removed (%)
7.2
Number of peaks
940 (qval < 1E-05)

Base call quality data from DBCLS SRA