Curated Sample Data


Genome
dm3
Antigen Class
Histone
Antigen
H3K27me3
Cell type Class
Embryo
Cell type
Embryos

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
embryo_ChIPSeq
genotype
5905
age
30min - 1 hour embryo
tissue
embryo
chip antibody
H3K27me3 (Millipore 07-449)

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For ChIP-Seq, 5% mouse epigenome was used as internal control for H3K27me3 IP. ChIP libraries were prepared according to instructions of NEB DNA library prep kit (NEB, E7370L). RNA libraries were prepared according to instructions of NEB Ultra RNA library prep kit (NEB, E7530L).

Platform Information


instrument_model
NextSeq 550

External Database Query

Logs in read processing pipeline


Number of total reads
11884963
Reads aligned (%)
80.8
Duplicates removed (%)
7.8
Number of peaks
1525 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA