Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2A

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
BOFS p2hNCC
cell line
BOFS hiPSC cl1
genotype
BOFS 88Mb inversion
treatment
hiPSC differentiation into hNCC (passage 2)
chip antibody
TFAP2A (sc-12726, Santa Cruz)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
34338617
Reads aligned (%)
40.9
Duplicates removed (%)
16.3
Number of peaks
28682 (qval < 1E-05)

hg38

Number of total reads
34338617
Reads aligned (%)
41.1
Duplicates removed (%)
16.1
Number of peaks
28670 (qval < 1E-05)

Base call quality data from DBCLS SRA