Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2C

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC UCLA1
NA
NA

Attributes by original data submitter

Sample

source_name
TFAP2C-/- UCLA1 hESCs transduced with a construct that allows doxycycline inducible expression of TFAP2C; cells were cultured in primed conditions and induced for 24 hours with doxycycline
cell type
TFAP2C-/- 1d TFAP2C Induc TFAP2C ChIP
passage number
p52
chip antibody
TFAP2C
library type
Ovation Ultralow Library System V2

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
40006710
Reads aligned (%)
86.8
Duplicates removed (%)
6.9
Number of peaks
12513 (qval < 1E-05)

hg38

Number of total reads
40006710
Reads aligned (%)
87.3
Duplicates removed (%)
6.6
Number of peaks
12656 (qval < 1E-05)

Base call quality data from DBCLS SRA