Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
Cultured cells
cell line
HepG2
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was prepared by MNase digestion and isolated with antibody. ChIP-seq libraries were prepared following the TruSEq Chip-SEQ kit (Illumina, San Diego, CA) as per manufacturer's instruction.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
56218115
Reads aligned (%)
99.1
Duplicates removed (%)
19.0
Number of peaks
702 (qval < 1E-05)

hg19

Number of total reads
56218115
Reads aligned (%)
98.3
Duplicates removed (%)
20.6
Number of peaks
696 (qval < 1E-05)

Base call quality data from DBCLS SRA