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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Pan-acetyllysine
wikigenes
PDBj
CellType: Hep G2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3506182
GSM2899155: ChIP-seq control Kac; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Pan-acetyllysine
Cell type
Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular
Attributes by original data submitter
Sample
source_name
Cultured cells
cell line
HepG2
chip antibody
Anti-Pan Kac (manufacturer: PTM Biolabs; catalog number: PTM-101; lot number: 01BC08M02)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was prepared by MNase digestion and isolated with antibody. ChIP-seq libraries were prepared following the TruSEq Chip-SEQ kit (Illumina, San Diego, CA) as per manufacturer's instruction.
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
48399990
Reads aligned (%)
99.3
Duplicates removed (%)
21.1
Number of peaks
11329 (qval < 1E-05)
hg19
Number of total reads
48399990
Reads aligned (%)
98.9
Duplicates removed (%)
22.0
Number of peaks
11216 (qval < 1E-05)
Base call quality data from
DBCLS SRA