SRX3466135
GSM2886570: LFD male HNF4a ChIPSeq replicate2 input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Colon
NA
NA

Attributes by original data submitter

Sample

source_name
colon epithelium
tissue
colon epithelium
strain
C57BL/6
Sex
male
chip antibody
none
diet
low fat diet

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chip-seq libraries were prepared by Bioo NEXTflex Rapid DNA-seq Kit (cat# 514402).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
46690389
Reads aligned (%)
96.0
Duplicates removed (%)
28.8
Number of peaks
225 (qval < 1E-05)

mm9

Number of total reads
46690389
Reads aligned (%)
95.9
Duplicates removed (%)
29.7
Number of peaks
226 (qval < 1E-05)

Base call quality data from DBCLS SRA