Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7
cell line
MCF7
experiment number
SLX-15091
cell type
mammary epithelial cells
chip antibody
ER (sc-543, Santa Cruz)
control antibody
CTCF (3418 XP, Cell Signaling)
treatment
Estrogen
replicate
Input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared according to the Thruplex DNA-seq Kit Manual

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
30261012
Reads aligned (%)
87.5
Duplicates removed (%)
10.7
Number of peaks
902 (qval < 1E-05)

hg38

Number of total reads
30261012
Reads aligned (%)
89.6
Duplicates removed (%)
9.3
Number of peaks
740 (qval < 1E-05)

Base call quality data from DBCLS SRA