Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS derived cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryoid bodies
cell line
iGATA2-hiPSC CL6
chip antibody
H-116: sc-9008, Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation assays were performed using ChIP-IT High Sensitive kit (Active Motif) following the manufacturer's instructions Libraries were prepared according to Illumina instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
46127732
Reads aligned (%)
31.5
Duplicates removed (%)
66.7
Number of peaks
1694 (qval < 1E-05)

hg38

Number of total reads
46127732
Reads aligned (%)
32.1
Duplicates removed (%)
66.2
Number of peaks
1745 (qval < 1E-05)

Base call quality data from DBCLS SRA