Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
Human Induced Pluripotent Stem Cells (hiPSCs)
cell line
iGATA2-hiPSC CL6
chip antibody
H-116: sc-9008, Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation assays were performed using ChIP-IT High Sensitive kit (Active Motif) following the manufacturer's instructions Libraries were prepared according to Illumina instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
48441327
Reads aligned (%)
39.9
Duplicates removed (%)
58.2
Number of peaks
1323 (qval < 1E-05)

hg38

Number of total reads
48441327
Reads aligned (%)
40.8
Duplicates removed (%)
57.3
Number of peaks
1214 (qval < 1E-05)

Base call quality data from DBCLS SRA