ChIP-Atlas: SRX3440418

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Gonad
Cell type: Round spermatids
NA: NA

Attributes by original data submitter

Sample

source_name: Germ cells
tissue: Testis
cell type: germ cells
cell type: Wild type
developmental stage: round spermatids
chip antibody: none (Input)

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: For RNA-seq data, we constructed the sequencing libraries using NEBNext Ultra DNA Library Prep Kit for Illumina (NEB #7370L). For ChIP-seq data, we constructed the sequencing libraries using Next Gen DNA Library Kit and Next Gen Indexing Kit(ACTIVE MOTIF #53216&53264).

Sequencing Platform

instrument_model: HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 26804858
Reads aligned (%): 94.6
Duplicates removed (%): 5.7
Number of peaks: 149 (qval < 1E-05)

mm9

Number of total reads: 26804858
Reads aligned (%): 94.5
Duplicates removed (%): 5.7
Number of peaks: 112 (qval < 1E-05)

Base call quality data from DBCLS SRA