Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Bone
Cell type
Osteosarcoma
MeSH Description
A sarcoma originating in bone-forming cells, affecting the ends of long bones. It is the most common and most malignant of sarcomas of the bones, and occurs chiefly among 10- to 25-year-old youths. (From Stedman, 25th ed)

Attributes by original data submitter

Sample

source_name
primary osteosarcoma tumor
tissue
primary osteosarcoma tumor
chip antibody
rabbit anti-H3K4me1 (Abcam #8895)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
68085483
Reads aligned (%)
95.0
Duplicates removed (%)
1.9
Number of peaks
65186 (qval < 1E-05)

hg19

Number of total reads
68085483
Reads aligned (%)
94.7
Duplicates removed (%)
1.9
Number of peaks
66763 (qval < 1E-05)

Base call quality data from DBCLS SRA